Outline

Food scientists with 3D data challenges will meet image visualisation and image quantification experts from QIM, Lund University and RISE to work together to establish a plan how to visualise, quantify and interpret the scientific content in their 3D images. In addition to identifying solutions and analysis approaches, establishing continuing collaborations is a usual outcome after 2 days of sitting working closely together.

Target audience

Food Scientists working with x-ray or neutron imaging who would like to learn more about 3D image analysis and/or would like help with image analysis challenges to extract details from their 3D data

Pre-requisites

Each food scientist participant should come with their own 3D x-ray or neutron tomography data to analyse during the hackathon. To help us prepare and also, in the event of over-subscription, to select participants, please provide a short description of the data and the scientific questions that you are trying to answer with the data (what would you like to extract from the images).

- 1 page including an image illustrating the data challenge. (If you are interested in participating, but do not yet have 3D imaging data of your sample, please contact Stephen Hall to see if it is possible to acquire data before the event)

When: 27-28 April, 2022
Where: LINXS at Ideon Delta 5, Lund
Registration deadline: April 15

Programme

Wednesday 27 April
10:00-10:30 Welcome coffee and introduction to the hackathon concept
10:30-11:30 Data owners describe their data and objectives (10 min each)
11:30-12:30 Image analysis experts give an overview of a selection of visualisation and image analysis tools
12:30-13:30 Lunch
13:30-13:45 defining teams & matching data owners with experts
13:45-14:00 Connection to LUNARC and data upload / software installation
14:00-15:00 Start exploring data / inspect with various tools
15:00-15:30 Coffee Break
15:30 continue group work

dinner at LINXS

Thursday 28 April:
09:00-09:30 Summary of previous day’s group work
09:30-10:30 continue group work
10:30-11:00 Coffee break
11:00-12:00 continue group work
12:00-13:00 Lunch
13:00-13:30 Summarise & forward plans
13:30 Continue group work as desired

Organizers

Stephen Hall (LINXS & Lund University)
Niklas Lorén (RISE)
Emanuel Larsson (Lund University, QIM)
Anders Bornholm Dahl (DTU, QIM)
Jon Sporring (University of Copenhagen, QIM)